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A key member of the Polycomb group (PcG) protein family is EED (Embryonic Ectoderm Development). Originally found in Drosophila as repressors of Hox genes, PcG proteins are now extensively important in multicellular development via controlling transcriptional silence of genes in mammals. At the core of the Polycomb Repressive Complex 2 (PRC2), the EED protein mostly controls gene silence by histone methylation, therefore influencing processes including cell proliferation, differentiation, and embryonic development.
Core subunits making up the PRC2 complex are EZH2, SUZ12, EED, and RBAP4/7. EED interacts with EZH2 through its WD40 repeat domain as a major component of the PRC2 complex, therefore helping the assembly and activation of the complex. On histone H3 (H3K27me3), PRC2 catalyzes the trimethylation of lysine 27, therefore suppressing the expression of particular genes. Stabilizing EZH2 activity throughout this process depends critically on EED, therefore guaranteeing the correct operation of PRC2.
EZH2 is a pivotal component of PRC2, showing histone methyltransferase activity through its SET domain, enabling methylation of lysine residues on histone H3. However, without the support of other subunits, EZH2 is usually auto-inhibited and largely inactive. During PRC2 assembly, EED is crucial for EZH2 activation by binding to its N-terminal region via the WD40 repeat domain, thus promoting robust methyltransferase activity and catalyzing H3K27 trimethylation. This epigenetic repressive mark not only inhibits target gene transcription but also aids in PRC2 chromatin binding.
Beyond its role in PRC2 assembly, EED recognizes H3K27me3 modifications through its aromatic cage structure. By binding to H3K27me3, EED enhances PRC2 enzymatic activity and establishes extensive methylation domains on chromatin. This mechanism is crucial for transcriptional repression and gene silencing propagation. EED's aromatic cage specifically recognizes and binds to H3K27me3, increasing PRC2 affinity for chromatin and facilitating genomic positioning.
In multicellular organisms, precise gene expression regulation is essential for determining cell fate during embryonic development. As a vital component of PRC2, EED contributes to pluripotency maintenance in embryonic stem cells and determines cell lineage during embryogenesis. EED regulates PRC2 activity to ensure specific gene silencing, promoting differentiation of particular cell types. Additionally, EED supports self-renewal and pluripotency of embryonic stem cells, making it a crucial target in developmental biology research.
Figure 1. EED protein is crucial for normal morphogenesis in several developmental processes, with its absence causing significant developmental defects. (Huang L, et al., 2023)
Recently, EED has emerged as an important epigenetic target in cancer research. Studies indicate that EED and the PRC2 complex play significant roles in cancer development and progression. EED maintains cancer cell proliferation and suppresses tumor suppressor gene expression through gene silencing regulation, promoting cancer growth. Consequently, developing EED inhibitors represents a promising direction in cancer therapy.
Some EED inhibitors have entered clinical trials, demonstrating positive therapeutic effects. For instance, EPZ-6438 (tazemetostat) targets EED, showing potential in treating certain cancer types by reshaping chromatin and restoring normal gene expression patterns, thus inhibiting cancer cell growth. This direction not only highlights EED's potential in cancer treatment but also offers new avenues for diseases linked to abnormal gene expression.
As an important epigenetic regulator, EED is involved in PRC2 assembly and activation, playing a critical role in gene silencing. Through interactions with EZH2 and H3K27me3, EED influences chromatin state and gene expression. EED can recognize H3K27me3 marks and interact with other epigenetic marks like H3K9me3 and H4K20me3, collectively promoting gene silencing and epigenetic repression.
EED's functionalities make it a significant target for studying epigenetics and gene regulation. As understanding of EED's functions deepens, research is exploring strategies to modulate EED activity to address aberrant gene expression and related diseases, opening new prospects for epigenetic therapeutic applications.
EED is part of the WD40 repeat protein family, characterized by seven WD40 repeat domains at its C-terminus, forming a seven-bladed β-propeller structure. This domain facilitates interactions with other proteins, notably binding EZH2, stabilizing its activity, and promoting PRC2 assembly and catalytic function.
Furthermore, EED's aromatic cage recognizes H3K27me3 trimethylation, regulating PRC2 chromatin spread, an essential mechanism for PRC2-mediated genomic silencing, and a core function of EED in gene expression regulation.
Through H3K27me3 interaction, EED promotes PRC2 assembly and activation, stabilizing EZH2 and promoting H3K27 methylation, creating broad silencing marks on chromatin. The PRC2 complex uses this mechanism to suppress specific genes in the genome, maintaining normal cell development and function.
EED's aromatic cage interacts with other epigenetic marks, enhancing PRC2 affinity for chromatin, and further promoting gene silencing. This mechanism provides new insights into gene regulation and lays a foundation for epigenetic therapy applications.
EED's developmental role extends beyond gene silencing, participating in cell fate and lineage choices. It regulates PRC2 activity during development, ensuring precise spatiotemporal gene expression, and facilitating different cell type formation. Its developmental importance makes EED a focal point in developmental biology research.
In disease, aberrant EED expression is linked to various disorders, especially cancer and genetic diseases. EED regulates gene expression in PRC2, involved in cell proliferation and differentiation, where dysfunction may lead to gene expression imbalance and disease manifestation. Developing EED inhibitors offers new treatment possibilities for cancer and genetic expression disorders.
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