Step 1: Determine optimal puromycin concentration
Before selection, you need to find the minimum puromycin concentration that kills >90% of your untransduced cells:
1. Seed cells in a 24-well plate at 50-60% confluence
2. After 24h, add different puromycin concentrations (try a range: 0.5, 1.0, 2.0, 4.0, 6.0, 8.0 μg/mL)
3. Observe for 48h and select the lowest concentration that kills >90% of cells
Step 2: Perform puromycin selection
1. Infect cells with your puromycin-resistant lentivirus
2. Allow 48-72h for viral expression (when infection efficiency reaches ~80%)
3. When cells reach 60-70% confluence, add the predetermined puromycin concentration
4. Maintain untransduced control cells with the same puromycin concentration
5. After ~48h (when >90% of control cells are dead), replace with fresh media without puromycin
6. For long-term maintenance, periodically re-select with puromycin
Step 3: Expand selected cells
After selection, expand cells through appropriate passages until you have sufficient numbers for:
- Mixed clone stable population experiments, or
- Single clone isolation procedures
Pro tip: For maintenance culture after initial selection, you can reduce puromycin concentration to 1/10 - 1/2 of the selection concentration to prevent transgene loss while minimizing stress on cells.