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Plasmid DNA Production Service

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Overview

At Creative Biogene, we leverage over a decade of expertise in molecular biology to provide a comprehensive and reliable plasmid DNA preparation platform. Our services support global research institutions, biotechnology companies, and pharmaceutical enterprises, offering end-to-end solutions ranging from basic research to preclinical and GMP-grade applications.

Our team has completed over 5,000 plasmid preparation projects, handling conventional plasmids as well as those with complex structures, high GC content, repetitive sequences, and unstable elements. Dedicated technical support ensures expert guidance throughout project design, execution, and troubleshooting.

Specialized Platform for Complex Plasmids

Creative Biogene has optimized processes for challenging plasmid constructs:

01 AAV ITR Stability

Specialized host strains, optimized culture conditions, and multi-level verification (restriction analysis, sequencing, functional assays) ensure >95% ITR integrity.

02 Long poly(A) Sequences

Directed cloning strategies and verification steps maintain >98% sequence fidelity.

03 High GC Content Regions

Optimized amplification and sequencing strategies prevent secondary structure formation and ensure sequence accuracy.

04 Large Plasmids (>20 kb)

Low-copy plasmids are extracted using gentle lysis methods and specialized purification for high recovery.

Service Portfolio

Research-Grade Plasmid DNA

Designed for general molecular biology applications, providing a cost-effective solution with reliable quality. Suitable for cloning, PCR, sequencing, restriction analysis, and educational experiments.

Transfection-Grade Plasmid DNA

Optimized for mammalian cell transfection, viral vector packaging, and recombinant protein expression. Ideal for transient and stable transfection, reporter assays, and gene function studies.

GMP-Grade Plasmid DNA

Produced under full regulatory compliance for preclinical and clinical applications. Suitable for gene therapy vectors, DNA vaccines, CAR-T cell therapy, virus production, and early-phase clinical studies.

Quality Control System

Our plasmid DNA services are supported by a multi-tiered quality control system that ensures consistency and reliability at every stage. From strain authentication to final product release, we implement stringent quality measures using advanced techniques such as agarose gel electrophoresis, HPLC, qPCR, and NGS. All quality control processes adhere to clearly defined acceptance criteria, with no compromise on standards.

Research-Grade

Transfection-Grade

GMP-Grade

QC ItemMethodAcceptance Criteria
AppearanceVisual InspectionColorless and transparent, no precipitation
Concentration & PurityUV SpectrophotometryA260/A280: 1.8–2.0; A260/A230 ≥ 2.0
IntegrityAgarose Gel ElectrophoresisClear main band, no obvious degradation
Restriction DigestRestriction Enzyme DigestionFragment sizes match expectation
Sequence VerificationSanger Sequencing (Optional)Insert region 100% correct
Residual Host DNAAgarose GelNot detectable
Residual RNAAgarose GelNot detectable
QC ItemMethodAcceptance Criteria
AppearanceVisual InspectionColorless and transparent, no precipitation
Concentration & PurityUV SpectrophotometryA260/A280: 1.8–2.0; A260/A230 ≥ 2.2
Supercoiled RatioHPLC / Capillary Electrophoresis>80%
EndotoxinChromogenic LAL Assay<0.1 EU/μg
IntegrityAgarose Gel ElectrophoresisClear main band, supercoiled dominant
Restriction DigestRestriction Enzyme DigestionFragment sizes match expectation
Sequence VerificationSanger Sequencing (Optional)Insert region 100% correct
Residual Host DNAqPCR<1%
Residual RNAFluorescence Assay<1%
SterilityDirect InoculationNo microbial growth
Mycoplasma DetectionPCR (Optional)Negative
QC ItemMethodAcceptance Criteria
AppearanceVisual InspectionColorless and transparent, no precipitation
IdentityRestriction Enzyme AnalysisMatches expected pattern
IdentityFull Sequence Verification (NGS)100% sequence match
ConcentrationUV A260Within specification
PurityUV A260/A2801.8–2.0
PurityHPLC>95%
Supercoiled RatioHPLC / CE>85%
EndotoxinChromogenic LAL Assay<0.01 EU/μg
Residual Host DNAqPCR<0.1%
Residual Host ProteinBCA / ELISA<0.1%
Residual RNAFluorescence Assay<0.5%
BioburdenMicrobial Limit Test<1 CFU/mg
SterilityMembrane FiltrationSterile
Mycoplasma TestCulture & PCRNegative
Recoverable YieldGravimetric>90% of labeled amount
SolubilityRedissolution TestFully soluble

Client Case Studies & Research Outcomes

Shear stress activation of Notch signaling to promote trabeculation. Shear stress activation of Notch signaling to promote trabeculation.

4-Dimensional light-sheet microscopy to elucidate shear stress modulation of cardiac trabeculation

Paper 2016
The Journal of Clinical Investigation | DOI
Background
This study integrates 4D selective plane illumination microscopy (SPIM) with a synchronization algorithm to image zebrafish cardiac morphogenesis and test how hemodynamic shear stress modulates trabeculation. Reducing blood viscosity with gata1a morpholino, arresting contraction with tnnt2a morpholino, or using weak atrium mutants lowered shear stress, downregulated Notch signaling, and attenuated trabeculation. Endocardial Notch activation was localized using Tg(flk:mCherry;tp1:gfp) fish. Neuregulin1 mRNA rescued trabeculation and contractile function. Pulsatile shear stress upregulated Notch signaling in endothelial cells, and an ADAM10 inhibitor blocked this response, linking shear stress to endocardial Notch-dependent trabeculation.
Key Findings
4D SPIM captured trabecular initiation in zebrafish from ~50 to 70 hpf. gata1a MO reduced hematopoiesis/viscosity, delayed trabeculation, and downregulated Dll4, Jag1, Jag2, Notch1b, Nrg1, and ErbB2. tnnt2a MO and wea mutants reduced shear stress, downregulated Notch-related genes, and attenuated or abolished trabeculation. clo mutants lacking endocardium developed nontrabeculated ventricles with reduced Notch signaling. Crossbreeding Tg(flk:mCherry) with Tg(tp1:gfp) localized shear-activated Notch to endocardium. Nrg1 mRNA coinjection restored trabeculation, upregulated Notch-related genes, and improved ventricular strain, fractional shortening, and ejection fraction. In HAEC, pulsatile shear stress upregulated Notch ligands and target genes, which was blocked by an ADAM10 inhibitor. EPO-augmented viscosity and isoproterenol did not increase trabeculation, while high-dose Nrg1 caused abnormal ventricular morphogenesis. Trabecular myocardium exhibited higher local strain, and loss of trabeculation reduced contractile function.
Contribution
Creative Biogene provided the zebrafish EPO cDNA/donor plasmid that was cloned into pCS2+ and used to synthesize EPO mRNA. This reagent enabled experiments increasing hematopoiesis and blood viscosity to test whether augmented shear stress alters Notch signaling and cardiac trabeculation.

Case Study 1

Researchers investigated cold-stress responses in rice by creating transgenic japonica lines to overexpress or knock down pri-miR1850, miR1850.1, and miR1850.2, using pCAMBIA3301 vectors supplied by Creative Biogene, CRISPR-Cas9 cassettes, and amiRNA/STTM constructs to study the miR1850–NPR3 module's effects on cold tolerance, disease resistance, and grain yield.

Rice pri-miR1850 and its mature miRNAs regulate cold stress responses, affecting gene expression, seedling survival, and reproductive traits.Figure 1. Rice pri-miR1850 and its mature miRNAs regulate cold stress responses, affecting gene expression, seedling survival, and reproductive traits. (Shen Y, et al., 2025)

Case Study 2

To investigate the ABI1 protein interactome, researchers constructed the MSCV‐TurboID‐Linker‐ABI1‐IRES‐GFP plasmid. This construct, synthesized in collaboration with Creative Biogene, enabled proximity-dependent biotin labeling of ABI1 in mammalian cells. Following transfection, biotinylated proteins were identified via mass spectrometry. The study successfully detected 212 ABI1 proximal interactors, including WAVE2 complex components and proteins associated with the TAK1‐IKK pathway.

Development of TurboID-based ABI1 proximity labeling tools and corresponding NIH/3T3 cell lines.Figure 2. Development of TurboID-based ABI1 proximity labeling tools and corresponding NIH/3T3 cell lines. (Petersen M, et al., 2023)

Order Process

Our streamlined workflow ensures clarity and efficiency:

1Discuss requirements and receive proposal within 48 hours.

2Confirm agreement, provide materials, and plan the project.

3Conduct strain validation, fermentation, plasmid extraction, and intermediate QC.

4Perform final testing, analyze data, compile reports, and release product.

5Ship product with documentation and provide ongoing technical support.

Contact Us

Whether for microgram-scale exploratory research or gram-scale clinical-grade plasmids, we provide consistent quality, professional service, and a reliable supply chain. Choosing Creative Biogene ensures a trusted scientific partner dedicated to advancing research outcomes.

FAQ

Q: How do I select the appropriate plasmid preparation grade?

A: Research-grade for basic experiments, transfection-grade for cell transfection and viral packaging, and GMP-grade for preclinical and clinical applications. Our technical team can recommend the optimal grade based on your needs.

Q: What types of plasmids can you process?

A: We handle high- and low-copy plasmids, sizes 2 kb–50 kb+, and plasmids with unstable sequences (e.g., ITRs, poly(A) regions). Please consult for special constructs.

Q: What documentation is provided for GMP-grade plasmids?

A: Complete GMP documentation, including batch production and QC records, release certificates, quality standards, analytical validation reports, and stability study data to support regulatory submissions.

Q: Why is endotoxin important, and how should I choose?

A: Endotoxin affects transfection efficiency, cell viability, and in vivo immune responses. Recommended levels: <10 EU/μg for bacterial transformation, <1 EU/μg for cell transfection, <0.1 EU/μg for in vivo experiments, and <0.01 EU/μg for clinical applications.

Q: Why is the supercoiled form important?

A: Supercoiled plasmids have higher transfection efficiency and stability. Research-grade >70%, transfection-grade >80%, GMP-grade >85%.

Contact our expert team to discuss your project needs and ensure the highest quality plasmid DNA for your research or therapeutic development.

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