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Human MTAP Knockout Cell Line-HCT116

Human MTAP Knockout Cell Line-HCT116

Cat.No. :  CSC-RT2701

Host Cell:  HCT116 Target Gene:  MTAP

Size:  1x10^6 cells/vial, 1mL Validation:  Sequencing

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Cell Line Information

Cell Culture Information

Safety and Packaging

Cat. No. CSC-RT2701
Description This cell is a stable cell line with a homozygous knockout of human MTAP using CRISPR/Cas9.
Target Gene MTAP
Host Cell HCT116
Host Cell Species Homo sapiens (Human)
Size Form 1 vial (10^6 cell/vial)
Shipping Dry ice package
Storage Liquid nirtogen
Revival Rapidly thaw cells in a 37°C water bath. Transfer contents into a tube containing pre-warmed media. Centrifuge cells and seed into a 25 cm2 flask containing pre-warmed media.
Mycoplasma Negative
Format One frozen vial containing millions of cells
Storage Liquid nitrogen
Safety Considerations

The following safety precautions should be observed.

1. Use pipette aids to prevent ingestion and keep aerosols down to a minimum.

2. No eating, drinking or smoking while handling the stable line.

3. Wash hands after handling the stable line and before leaving the lab.

4. Decontaminate work surface with disinfectant or 70% ethanol before and after working with stable cells.

5. All waste should be considered hazardous.

6. Dispose of all liquid waste after each experiment and treat with bleach.

Ship Dry ice
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Background

Case Study

Applications

Publications

Q & A

Customer Reviews

The MTAP gene encodes the enzyme methylthioadenosine phosphorylase (MTAP), which plays a key role in polyamine metabolism. The enzyme primarily facilitates the breakdown of S-methyl-5'-thioadenosine (MTA) into adenine and 5-methylthioribose-1-phosphate, an essential initial step in the methionine salvage pathway. This biochemical process is essential for cellular functions, including the synthesis of nucleic acids and proteins. The gene is located near the tumor suppressor gene p16 on chromosome 9 and is therefore susceptible to co-deletion, which has been observed in various cancers. Loss or reduced expression of MTAP leads to the accumulation of MTA, which normally has tumor suppressor properties. However, at higher concentrations, MTA instead promotes tumor growth and cell proliferation. MTAP deficiency in cancer cells provides a unique therapeutic target. Researchers are investigating strategies to exploit this weakness, aiming to develop treatments that can selectively target MTAP-deficient tumors. Understanding the structure-function relationship of this enzyme and its regulatory mechanisms opens the way to potential new cancer treatments. MTAP is also of importance in parasitology. For example, in the protozoan parasite Trypanosoma brucei, the causative agent of African trypanosomiasis, MTAP exhibits broad specificity, cleaving MTA as well as other adenine derivatives. This activity is essential for the survival of the parasite as it helps prevent the toxic accumulation of deoxyadenosine triphosphate (dATP).

The methylthioadenosine phosphorylase (MTAP) gene is located adjacent to the cyclin-dependent kinase inhibitor 2A (CDKN2A) tumor suppressor gene and is co-deleted with CDKN2A in approximately 15% of cancers. This co-deletion leads to malignancy, poor prognosis, and lack of effective molecular targeted therapies. The metabolic enzyme methionine adenosyltransferase 2α (MAT2A) has been identified as a synthetic lethal target in MTAP-deficient cancers. Here, researchers report the characterization of potent MAT2A inhibitors that significantly reduce S-adenosylmethionine (SAM) levels and exhibit antiproliferative activity in MTAP-deficient cancer cells and tumors. Using RNA sequencing and proteomics, they demonstrate that MAT2A inhibition is mechanistically linked to reduced protein arginine methyltransferase 5 (PRMT5) activity and splicing perturbations. We further show that MAT2A inhibition leads to DNA damage and mitotic defects in HCT116 MTAP knockout cells, providing a rationale for combining the MAT2A clinical candidate AG-270 with antimitotic taxanes.

AGI-24512, a MAT2A inhibitor, showed 3-6 orders of magnitude greater cellular potency than previously reported MAT2A inhibitors PF-9366 and cycloleucine. Reduced incorporation of thethymidine analog 5-ethynyl-2′-deoxyuridine (EdU) was measured by immunofluorescence analysis in MTAP knockout (MTAP−/−) cells but not in WT cells (Figures 1A and 1B). However, no significant cell cycle checkpoint activation was detected after inhibition of MAT2A in asynchronously proliferating cells. As AGI-24512-induced cell cycle alterations may be more pronounced in synchronized cells, a double thymidine blockade was performed to synchronize cells pretreated with AGI-24512 for 72 hours in early S phase (Figure 1C). After release from replication block, progression from G1 into S and G2/M phases was significantly attenuated in MTAP−/− cells treated with AGI-24512, but not in WT cells (Figures 4C and 4D). These cell cycle changes were accompanied by DNA damage at the chromosomal level, as indicated by the formation of micronuclei and the appearance of binucleated and multinucleated cells after treatment with AGI-24512 (Figures 1E-1H). Both the formation of micronuclei and the appearance of multinucleated cells were restricted to MTAP−/− cells and absent in WT cells.

Figure 1. Pharmacologic Inhibition of MAT2A Leads to MTAP−/− Genotype-Selective Cell-Cycle Delays and Mitotic Defects.Figure 1. Pharmacologic Inhibition of MAT2A Leads to MTAP−/− Genotype-Selective Cell-Cycle Delays and Mitotic Defects. (Kalev P, et al., 2021)

Applications of Human MTAP Knockout Cell Line - HCT116 Cancer Research: MTAP (methylthioadenosine phosphorylase) knockout cell lines are widely used to study its role in tumorigenesis. MTAP is frequently deleted in various cancers, so it is critical to understand how its loss contributes to the development and progression of cancer. Researchers use this cell line to identify potential therapeutic targets and develop new cancer treatments. Metabolic Research: MTAP is involved in the methionine salvage pathway and is essential for cellular metabolism. By using MTAP knockout cell lines, scientists can explore metabolic changes caused by the loss of this enzyme. This helps understand the metabolic dependencies of cancer cells and discover weaknesses that can be targeted with new therapies. Drug Screening: This cell line is very useful for high-throughput drug screening. It allows researchers to test multiple compounds to identify compounds that are selectively toxic to MTAP-deleted cells, thereby developing targeted cancer therapies that may have fewer side effects. Gene Function Studies: MTAP knockout cell lines are an important model for elucidating the biological functions of the MTAP gene. By comparing the knockout cells to normal cells, the researchers can determine the specific roles that MTAP plays in various cellular processes, including DNA repair, cell cycle regulation, and apoptosis.
Customer Q&As
How is the knockout cell line validated?

A: The knockout cell product is validated by PCR amplification and Sanger Sequencing to confirm the mutation at the genomic level. Please find the detailed mutation info in the datasheet.

Is the product a single clonal cell or mixed cell pool?

A: Single clonal cell.

Can I confirm gene knockout by RT-qPCR?

A: No. This knockout cell product is generated using the CRISPR/Cas9 system to induce small insertions or deletions (indels) resulting in frameshift mutations. Although these frameshift mutations typically disrupt the coding gene, there is a possibility that the non-functional transcript may still be transcribed. Consequently, this could potentially yield misleading results when analyzed by RT-qPCR.

How can I store the cell product?

A: The cell line should be stored in liquid nitrogen for long-term preservation.

Is it possible to get multiple knockout clones for my GOI?

A: For most cases, we often keep at least 2 clones with different frameshift mutations. Please feel free to contact us to check if there are additional available clones.

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Customer Reviews
Time-Saving

The cells arrived quickly and in perfect condition, allowing us to dive straight into our experiments. We no longer have to spend precious weeks generating knockout cell lines ourselves.

French

11/30/2022

Great!

As a researcher studying cancer metabolism, the Human MTAP Knockout Cell Line-HCT116 has significantly enhanced our ability to explore therapeutic targets.

United Kingdom

03/28/2022

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