BRD1

Official Full Name

bromodomain containing 1

Organism

Homo sapiens

Gene ID

23774

Background

This gene encodes a bromodomain-containing protein that localizes to the nucleus and can interact with DNA and histone tails. The encoded protein is a component of the MOZ/MORF acetyltransferase complex and can stimulate acetylation of histones H3 and H4, thereby potentially playing a role in gene activation. Variation in this gene is associated with schizophrenia and bipolar disorder in some study populations. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2017]

Synonyms

BRL; BRPF1; BRPF2

Cat.No.	Product Name	Price
CSC-DC001525	Panoply™ Human BRD1 Knockdown Stable Cell Line	Inquiry
CSC-SC001525	Panoply™ Human BRD1 Over-expressing Stable Cell Line	Inquiry

Cat.No.	Product Name	Price
AD01898Z	Human BRD1 adenoviral particles	Inquiry
LV06315L	human BRD1 (NM_014577) lentivirus particles	Inquiry

Cat.No.	Product Name	Price
SHG104149	shRNA set against Human BRD1(NM_014577.1)	Inquiry
SHG104209	shRNA set against Mouse Brd1(NM_001033274.3)	Inquiry
SHH247582	shRNA set against Human BRD1 (NM_014577.1)	Inquiry
SHH247586	shRNA set against Mouse BRD1 (NM_001033274.3)	Inquiry
SHH247590	shRNA set against Rat BRD1 (NM_001108103.1)	Inquiry
SHW003279	shRNA set against Chicken BRD1 (NM_001199482)	Inquiry

Cat.No.	Product Name	Price
CDFG017755	Mouse Brd1 cDNA Clone(NM_001033274.3)	Inquiry
CDFH001907	Human BRD1 cDNA Clone(NM_014577.1)	Inquiry
CDFR007768	Rat Brd1 cDNA Clone(NM_001108103.1)	Inquiry
MiUTR1H-00939	BRD1 miRNA 3'UTR clone	Inquiry
MiUTR1M-02260	BRD1 miRNA 3'UTR clone	Inquiry
CDCB164754	Chicken BRD1 ORF Clone (NM_001199482)	Inquiry
CDCB189857	Rabbit BRD1 ORF clone (XM_008252891.1)	Inquiry
CDCR035168	Mouse Brd1 ORF clone (NM_001033274.3)	Inquiry
CDCR297828	Human BRD1 ORF Clone(NM_014577.1)	Inquiry
CDCR374795	Rat Brd1 ORF Clone(NM_001108103.1)	Inquiry

Detailed Information

BRD1 (BRPF2) has multiple domains, including two PHD fingers, PHD1 and PHD2. PHD fingers have been shown to bind to methylated and unmethylated histones. That the first PHD finger of BRD1 specifically recognizes the N-terminal tail of unmodified histone H3. And bromodomain is an approximately 110 amino acid protein domain that recognizes acetylated lysine residues, such as those on the N-terminal tails of histones. Bromodomains, as the "readers" of lysine acetylation, are responsible in transducing the signal carried by acetylated lysine residues and translating it into various normal or abnormal phenotypes. The regulation of chromosome dynamics determines the outcome of numerous nuclear processes such as transcription, DNA repair, recombination, and replication. Furthermore, extensive loss of histone H4 Lys16 acetylation and Lys20 tri-methylation is a feature of human cancer, and the analysis of global changes in histone modification patterns is envisaged as a prognostic marker in prostate cancer treatment. Lysine acetylation is a reversible post translational modification of proteins that initially was studied in histone regulation, chromatin remodeling and gene expression and recently shown to modulate diverse cellular processes, including cell cycle regulation, RNA splicing, nuclear transport and actin nucleation.

MOZ (monocytic leukemic zinc-finger protein) and MORF (MOZ-related factor) are histone acetyltransferases important for HOX gene expression as well as embryo and postnatal development. Along with the catalytic subunits KAT6A and KAT6B, the MOZ/MORF complexes contain adaptor proteins BRPF1/2/3 (bromodomain PHD finger proteins 1, 2, or 3), ING5 (inhibitor of growth 5), and hEAF6 (homolog of Esa1-associated factor 6) (Fig. 1A). Of the four subunits, the three KAT6A/B, BRPF1/2/3, and ING5 contain PTM readers, including a bromodomain (BD), a PWWP domain, and a number of PHD fingers, organization and functions of which differ substantially (Fig. 1B). The tandem PHD fingers in the catalytic KAT6A/B subunit are coupled to form a distinct module-the double PHD finger (DPF). The BRPF1/2/3 subunit has an assembly of two PHD fingers closely linked by a zinc knuckle, named a PZP module, and a typical single PHD finger is seen in ING5.

It has been proved that histone modifiers, such as histone acetyltransferase complexes, function in a stepwise manner. First, they receive and interpret signals (e.g. histone modification patterns), which are site-specific and are recruited to the target sites. They are then further stabilized on the chromatin template to allow the core protein (e.g. MOZ / MORF) to function effectively with its substrate. For primary recruitment, multivalent interactions may bring complex substrate specificity, which is greater than the intrinsic specificity of any of the discrete binding interactions. As for MOZ/MORF complexes, BRD1 plays potential roles in regulating their preference for histone H3. For the secondary stabilization, multiple modest interactions may drastically improve the substrate affinity through an increase in the probability of rebinding to one of the effector modules in the same complex. In the case of the MOZ/MORF complex, the PHD1 fingers of BRD1 proteins are required to strengthen the binding of MOZ/MORF to their substrates. In vitro histone acetyltransferase assay showed the HAT activity of MORF toward H3 peptide increased when BRPF1 was added. Dimethylation of H3K4, but not H3K9, antagonized this increase in HAT activity, consistent with the histone binding affinity of PHD1. The ChIP assay also showed that disrupting the interaction between BRPF2-PHD1 and histones did not eliminate its targeting of the HOXA9 locus. One explanation is that the interaction between BRD1 and unH3 is not involved in the recruitment of the MOZ/MORF complex to the target sites; rather, its role is to strengthen the combination with chromatin.

Fig 1. The MOZ/MORF composition. (Klein et al. Epigenetics. 2014;9(2):186-193.).

References:

Ullah M, Pelletier N, Xiao L, et al. Molecular Architecture of Quartet MOZ/MORF Histone Acetyltransferase Complexes. Molecular and Cellular Biology. 2008;28(22):6828-6843.
GAO N, REN J, HOU L, et al. Identification of novel potent human testis-specific and bromodomain-containing protein (BRDT) inhibitors using crystal structure-based virtual screening. International Journal of Molecular Medicine. 2016;38(1):39-44.
Qin S, Jin L, Zhang J, et al. Recognition of Unmodified Histone H3 by the First PHD Finger of Bromodomain-PHD Finger Protein 2 Provides Insights into the Regulation of Histone Acetyltransferases Monocytic Leukemic Zinc-finger Protein (MOZ) and MOZ-related factor (MORF). The Journal of Biological Chemistry. 2011;286(42):36944-36955.
Dingerdissen HM, Torcivia-Rodriguez J, Hu Y, Chang TC, Mazumder R, Kahsay R. BioMuta and BioXpress: mutation and expression knowledgebases for cancer biomarker discovery. Nucleic Acids Research, gkx907. 2017 Oct 09.
Klein BJ, Lalonde M-E, Côté J, Yang X-J, Kutateladze TG. Crosstalk between epigenetic readers regulates the MOZ/MORF HAT complexes. Epigenetics. 2014;9(2):186-193.

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